[1]. XiaoliShi, …,
Beifang Niu#, Jun Xiao#, Junming Li#, Hong Qing Ling#. (2022). Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong9204. Molecular Plant, 15(9):1440-1456. (#co-corresponding authors)
[2]. Xinyin Han*, Shuying Zhang*, …, Li Ding#, Beifang Niu#. (2021). MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data. Briefings in Bioinformatics, 22(5): bbaa402.
[3]. The ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium. (2020). Pan-cancer analysis of whole genomes. Nature, 578(7793): 82-93.
(#Beifang Niu was a member of TCGA Consortium)
[4]. Zekun Yin, …, Weiguo Liu#, Beifang Niu#. (2019, November). DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences. IEEE International Conference on Bioinformatics and Biomedicine (BIBM): 2272-2279.
[5]. Beifang Niu*, Adam D. Scott*, Sohini Sengupta*, …, Feng Chen#, Li Ding#. (2016). Protein-structure-guided discovery of functional mutations across 19 cancer types. Nature Genetics, 48(8): 827-837.
[6]. Beifang Niu*, Kai Ye*, …, Michael C. Wendl, Li Ding#. (2014). MSIsensor: microsatellite instability detection using paired tumor-normal sequence data. Bioinformatics, 30(7):1015-1016.
[7]. Cyriac Kandoth*, Michael D McLellan*, Fabio Vandin, Kai Ye, Beifang Niu, …, Li Ding#. (2013). Mutational landscape and significance across 12 major cancer types. Nature, 502 (7471): 333-339.
[8]. Beifang Niu, Limin Fu, Shulei Sun, Weizhong Li#. (2010). Artificial and natural duplicates in pyrosequencing reads of metagenomic data. BMC Bioinformatics, 11:187.
